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GrainGenes Marker Report: POPA3_0054

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Locus	POPA3_0054
Type	SNP
Synonym	Synonym 12_30054
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 61.04 Hordeum-OPA123-2008-4H 61.04 Hordeum-OPAConsensus-2011-4H 70.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_17068
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0054 Marker name in barley OPA1 = 12_30054 Original SNP name = ABC06435_1_76 Most representative HarvEST:Barley Assembly #32 Unigene = 4646 Most representative HarvEST:Barley Assembly #35 Unigene = 17068 HarvEST Unigene 35 Probe Set = Contig6435_at Unigene 35 Rice Locus = LOC_Os03g15050 Description for best rice BLAST hit to Unigene 35 member = phosphoenolpyruvate carboxykinase, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0054 Marker name in barley OPA2 = 12_30054 Description for best rice BLAST hit to Unigene 35 member = protein phosphoenolpyruvate carboxykinase, putative, expressed; E value = 0 BLAST hit in the rice genome = phosphoenolpyruvate carboxykinase, putative, expressed
Probe for Locus	HAR35_17068
Locus	POPA3_0054
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare