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GrainGenes Marker Report: POPA3_0008

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Locus
POPA3_0008
Type
SNP
Synonym
Other name12_30008
BOPA2_12_30008
Synonym12_30008
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_14711
i_12_30008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 8 ]
Marker name in barley Pilot OPA1 = 3_0008
Marker name in barley OPA1 = 12_30008
Original SNP name = ABC01829_1_443
Most representative HarvEST:Barley Assembly #32 Unigene = 1231
Most representative HarvEST:Barley Assembly #35 Unigene = 14711
HarvEST Unigene 35 Probe Set = Contig1826_s_at; Contig1829_at
Unigene 35 Rice Locus = LOC_Os01g53330
BLAST hit in the rice genome = anthocyanidin 5,3-O-glucosyltransferase, putative, expressed



Probe for Locus
HAR35_14711
Locus
POPA3_0008