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GrainGenes Marker Report: POPA3_0007

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Locus	POPA3_0007
Type	SNP
Synonym	Other name 12_30007 BOPA2_12_30007 Synonym 12_30007
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 70.48 Hordeum-OPA123-2008-5H 70.48 Hordeum-OPAConsensus-2011-5H 60.21
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14262 i_12_30007
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0007 Marker name in barley OPA1 = 12_30007 Original SNP name = ABC01814_1_319 Most representative HarvEST:Barley Assembly #32 Unigene = 1218 Most representative HarvEST:Barley Assembly #35 Unigene = 14262 HarvEST Unigene 35 Probe Set = Contig1814_at Unigene 35 Rice Locus = LOC_Os09g26810 Description for best rice BLAST hit to Unigene 35 member = chlorophyll a-b binding protein, chloroplast precursor, putative, expressed; E value = 1E-131 Marker name in barley Pilot OPA3 = 3_0007 Marker name in barley OPA2 = 12_30007 Description for best rice BLAST hit to Unigene 35 member = protein chlorophyll a-b binding protein, chloroplast precursor, putative, expressed; E value = 1E-131 BLAST hit in the rice genome = chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_14262
Locus	POPA3_0007
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare