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GrainGenes Marker Report: POPA2_1440

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Locus	POPA2_1440
Type	SNP
Synonym	Other name 11_21440 BOPA1_11_21440 BOPA1_9701-925 Synonym 11_21440
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 118 Hordeum-OPA-2009-2H 126.03 Hordeum-OPA123-2008-2H 126.03 Hordeum-OPAConsensus-2011-2H 140.69
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18843 i_11_21440
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1440 Marker name in barley OPA1 = 11_21440 Original SNP name = 9701-925 Most representative HarvEST:Barley Assembly #32 Unigene = 9701 Most representative HarvEST:Barley Assembly #35 Unigene = 18843 HarvEST Unigene 35 Probe Set = Contig12109_at; Contig12110_s_at Unigene 35 Rice Locus = LOC_Os03g61640 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-102 Marker name in barley Pilot OPA2 = 2_1440 HarvEST Unigene 35 Probe Set = Contig12109_at, Contig12110_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-102 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_18843
Locus	POPA2_1440
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare