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GrainGenes Marker Report: POPA2_1437

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Locus
POPA2_1437
Type
SNP
Synonym
Other name11_21437
BOPA1_11_21437
BOPA1_9672-758
Synonym11_21437
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H13.9
Hordeum-OPA-2009-7H17.2
Hordeum-OPA123-2008-7H17.2
Hordeum-OPAConsensus-2011-7H11.65
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19587
i_11_21437
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1437
Marker name in barley OPA1 = 11_21437
Original SNP name = 9672-758
Most representative HarvEST:Barley Assembly #32 Unigene = 9672
Most representative HarvEST:Barley Assembly #35 Unigene = 19587
HarvEST Unigene 35 Probe Set = Contig12252_at
Unigene 35 Rice Locus = LOC_Os06g09420
Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 1E-66
Marker name in barley Pilot OPA2 = 2_1437
Description for best rice BLAST hit to Unigene 35 member = protein DNA binding protein, putative, expressed; E value = 1E-66
BLAST hit in the rice genome = DNA binding protein, putative, expressed


Probe for Locus
HAR35_19587
Locus
POPA2_1437
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare