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GrainGenes Marker Report: POPA2_1431

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Locus	POPA2_1431
Type	SNP
Synonym	Other name 11_21431 BOPA1_11_21431 BOPA1_9638-619 Synonym 11_21431
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 59.4 Hordeum-OPA-2009-1H 64.91 Hordeum-OPA123-2008-1H 64.91 Hordeum-OPAConsensus-2011-1H 62.6 Hordeum-OWB-OPA2008-1H 71.917
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_5005 i_11_21431
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1431 Marker name in barley OPA1 = 11_21431 Original SNP name = 9638-619 Most representative HarvEST:Barley Assembly #32 Unigene = 9638 Most representative HarvEST:Barley Assembly #35 Unigene = 5005 HarvEST Unigene 35 Probe Set = Contig12154_at; HVSMEk0020L22r2_s_at Unigene 35 Rice Locus = LOC_Os05g32570 Description for best rice BLAST hit to Unigene 35 member = RING E3 ligase protein, putative, expressed; E value = 1E-88 Marker name in barley Pilot OPA2 = 2_1431 HarvEST Unigene 35 Probe Set = Contig12154_at, HVSMEk0020L22r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein RING E3 ligase protein, putative, expressed; E value = 1E-88 BLAST hit in the rice genome = RING E3 ligase protein, putative, expressed
Probe for Locus	HAR35_5005
Locus	POPA2_1431
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare