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GrainGenes Marker Report: POPA2_1292

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Locus	POPA2_1292
Type	SNP
Chromosome	7H
Chromosome Arm	7HS
Map	Barley-Core-2014_7H 42.11 Hordeum-OPA-2009-7H 41.58 Hordeum-OPA123-2008-7H 41.58 Hordeum-OPAConsensus-2011-7H 34.91 Hordeum-OWB-OPA2008-7H 38.744
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_18924
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1292 Most representative HarvEST:Barley Assembly #32 Unigene = 8003 Most representative HarvEST:Barley Assembly #35 Unigene = 18924 HarvEST Unigene 35 Probe Set = Contig10563_at Unigene 35 Rice Locus = LOC_Os06g06780 Description for best rice BLAST hit to Unigene 35 member = harpin-induced protein, putative, expressed; E value = 2E-87 Marker name in barley Pilot OPA2 = 2_1292 Original SNP name = 8003-380 Description for best rice BLAST hit to Unigene 35 member = protein harpin-induced protein, putative, expressed; E value = 2E-87 BLAST hit in the rice genome = harpin-induced protein, putative, expressed
Probe for Locus	HAR35_18924
Locus	POPA2_1292
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare