Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1238

[Submit comment/correction]

Locus	POPA2_1238
Type	SNP
Synonym	Other name 11_21238 BOPA1_11_21238 BOPA1_7487-390 Synonym 11_21238
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 113.48 Hordeum-OPA123-2008-2H 113.48 Hordeum-OPAConsensus-2011-2H 125.97 Hordeum-OWB-OPA2008-2H 134.745
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4375 i_11_21238
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1238 Marker name in barley OPA1 = 11_21238 Original SNP name = 7487-390 Most representative HarvEST:Barley Assembly #32 Unigene = 7487 Most representative HarvEST:Barley Assembly #35 Unigene = 4375 HarvEST Unigene 35 Probe Set = Contig9754_at Unigene 35 Rice Locus = LOC_Os04g52750 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.000002 Marker name in barley Pilot OPA2 = 2_1238 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.000002 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_4375
Locus	POPA2_1238
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare