GrainGenes Marker Report: POPA2_1159
Locus
POPA2_1159
Type
SNP
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H 139.72 Hordeum-OPA123-2008-7H 139.72
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_4327
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1159 Most representative HarvEST:Barley Assembly #32 Unigene = 6864 Most representative HarvEST:Barley Assembly #35 Unigene = 4327 HarvEST Unigene 35 Probe Set = Contig9138_at Unigene 35 Rice Locus = LOC_Os06g43880 Marker name in barley Pilot OPA2 = 2_1159 Original SNP name = 6864-331 Description for best rice BLAST hit to Unigene 35 member = protein homogentisic acid geranylgeranyl transferase, putative, expressed; E value = 1E-153 BLAST hit in the rice genome = homogentisic acid geranylgeranyl transferase, putative, expressed
Probe for Locus
HAR35_4327
Locus
POPA2_1159
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1159
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