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GrainGenes Marker Report: POPA2_1104

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Locus
POPA2_1104
Type
SNP
Synonym
Other name11_21104
BOPA1_11_21104
BOPA1_6470-1005
Synonym11_21104
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H133.79
Hordeum-OPA123-2008-7H133.79
Hordeum-OPAConsensus-2011-7H134.1
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17938
i_11_21104
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1104
Marker name in barley OPA1 = 11_21104
Original SNP name = 6470-1005
Most representative HarvEST:Barley Assembly #32 Unigene = 6470
Most representative HarvEST:Barley Assembly #35 Unigene = 17938
HarvEST Unigene 35 Probe Set = Contig8707_s_at
Unigene 35 Rice Locus = LOC_Os06g40050
Description for best rice BLAST hit to Unigene 35 member = protein brittle-1, chloroplast precursor, putative, expressed; E value = 1E-141
Marker name in barley Pilot OPA2 = 2_1104
Description for best rice BLAST hit to Unigene 35 member = protein protein brittle-1, chloroplast precursor, putative, expressed; E value = 1E-141
BLAST hit in the rice genome = protein brittle-1, chloroplast precursor, putative, expressed


Probe for Locus
HAR35_17938
Locus
POPA2_1104
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare