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GrainGenes Marker Report: POPA2_0998

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Locus	POPA2_0998
Type	SNP
Synonym	Other name 11_20998 BOPA1_11_20998 BOPA1_5796-1189 Synonym 11_20998
Chromosome	7H
Chromosome Arm	7HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_17861 i_11_20998
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0998 Marker name in barley OPA1 = 11_20998 Original SNP name = 5796-1189 Most representative HarvEST:Barley Assembly #32 Unigene = 5796 Most representative HarvEST:Barley Assembly #35 Unigene = 17861 HarvEST Unigene 35 Probe Set = Contig7666_at; Contig7666_s_at Unigene 35 Rice Locus = LOC_Os01g19020 Description for best rice BLAST hit to Unigene 35 member = peroxidase 1 precursor, putative, expressed; E value = 1E-151 BLAST hit in the rice genome = peroxidase 1 precursor, putative, expressed
Probe for Locus	HAR35_17861
Locus	POPA2_0998