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GrainGenes Marker Report: POPA2_0940

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Locus	POPA2_0940
Type	SNP
Synonym	Other name 11_20940 BOPA1_11_20940 BOPA1_5477-757 Synonym 11_20940
Chromosome	1H
Chromosome Arm	1HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_17452 i_11_20940
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0940 Marker name in barley OPA1 = 11_20940 Original SNP name = 5477-757 Most representative HarvEST:Barley Assembly #32 Unigene = 5477 Most representative HarvEST:Barley Assembly #35 Unigene = 17452 HarvEST Unigene 35 Probe Set = Contig7490_at Unigene 35 Rice Locus = LOC_Os05g48810 Description for best rice BLAST hit to Unigene 35 member = dnaJ homolog subfamily B member 5, putative, expressed; E value = 0 BLAST hit in the rice genome = dnaJ homolog subfamily B member 5, putative, expressed
Probe for Locus	HAR35_17452
Locus	POPA2_0940