Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0799

[Submit comment/correction]

Locus	POPA2_0799
Type	SNP
Synonym	Other name 11_20799 BOPA1_11_20799 BOPA1_4721-1335 Synonym 11_20799
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 55 Hordeum-OPA-2009-6H 55.65 Hordeum-OPA123-2008-6H 55.65 Hordeum-OPAConsensus-2011-6H 59.25 Hordeum-OWB-OPA2008-6H 67.419
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16233 i_11_20799
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0799 Marker name in barley OPA1 = 11_20799 Original SNP name = 4721-1335 Most representative HarvEST:Barley Assembly #32 Unigene = 4721 Most representative HarvEST:Barley Assembly #35 Unigene = 16233 HarvEST Unigene 35 Probe Set = Contig6617_at Unigene 35 Rice Locus = LOC_Os02g38200 Description for best rice BLAST hit to Unigene 35 member = isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0799 Original SNP name = U35_4793_444 Description for best rice BLAST hit to Unigene 35 member = protein isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_16233
Locus	POPA2_0799
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare