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GrainGenes Marker Report: POPA2_0718

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Locus	POPA2_0718
Type	SNP
Synonym	Other name 11_20718 BOPA1_11_20718 BOPA1_4250-402 Synonym 11_20718
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 78.5 Hordeum-OPA-2009-4H 82.42 Hordeum-OPA123-2008-4H 82.42 Hordeum-OPAConsensus-2011-4H 90.77
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2422 i_11_20718
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0718 Marker name in barley OPA1 = 11_20718 Original SNP name = 4250-402 Most representative HarvEST:Barley Assembly #32 Unigene = 4250 Most representative HarvEST:Barley Assembly #35 Unigene = 2422 HarvEST Unigene 35 Probe Set = Contig5946_at Unigene 35 Rice Locus = LOC_Os03g07180 Description for best rice BLAST hit to Unigene 35 member = embryonic protein DC-8, putative, expressed; E value = 1E-54 Marker name in barley Pilot OPA2 = 2_0718 Description for best rice BLAST hit to Unigene 35 member = protein embryonic protein DC-8, putative, expressed; E value = 1E-54 BLAST hit in the rice genome = embryonic protein DC-8, putative, expressed
Probe for Locus	HAR35_2422
Locus	POPA2_0718
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare