GrainGenes Marker Report: POPA2_0717
Locus
POPA2_0717
Type
SNP
Chromosome
4H
Chromosome Arm
4HL
Map
Barley-Core-2014_4H 62.92 Hordeum-OPA-2009-4H 68.21 Hordeum-OPA123-2008-4H 68.21 Hordeum-OPAConsensus-2011-4H 79.47
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_98
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0717 Most representative HarvEST:Barley Assembly #32 Unigene = 424 Most representative HarvEST:Barley Assembly #35 Unigene = 98 HarvEST Unigene 35 Probe Set = Contig653_at; Contig7969_at; rbags1d23_s_at Unigene 35 Rice Locus = LOC_Os03g21080 Description for best rice BLAST hit to Unigene 35 member = guanine nucleotide exchange factor, putative, expressed; E value = 8E-83 Marker name in barley Pilot OPA2 = 2_0717 Original SNP name = 424-272 HarvEST Unigene 35 Probe Set = Contig653_at, Contig7969_at, rbags1d23_s_at Description for best rice BLAST hit to Unigene 35 member = protein guanine nucleotide exchange factor, putative, expressed; E value = 8E-83 BLAST hit in the rice genome = guanine nucleotide exchange factor, putative, expressed
Probe for Locus
HAR35_98
Locus
POPA1_0627 POPA3_1536 POPA2_0717
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0717
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