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GrainGenes Marker Report: POPA2_0685

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Locus	POPA2_0685
Type	SNP
Synonym	Other name 12_20685 BOPA2_12_20685 Synonym 12_20685
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 91.79 Hordeum-OPA123-2008-7H 91.79 Hordeum-OPAConsensus-2011-7H 94.34 Hordeum-OWB-OPA2008-7H 95.017
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2070 i_12_20685
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0685 Marker name in barley OPA1 = 12_20685 Original SNP name = 4115-1516 Most representative HarvEST:Barley Assembly #32 Unigene = 4115 Most representative HarvEST:Barley Assembly #35 Unigene = 2070 HarvEST Unigene 35 Probe Set = Contig5748_at Unigene 35 Rice Locus = LOC_Os06g40450 Description for best rice BLAST hit to Unigene 35 member = WDL1, putative, expressed; E value = 1E-143 Marker name in barley Pilot OPA2 = 2_0685 Marker name in barley OPA2 = 12_20685 Original SNP name = ABC04282_1_545 Description for best rice BLAST hit to Unigene 35 member = protein WDL1, putative, expressed; E value = 1E-143 BLAST hit in the rice genome = WDL1, putative, expressed
Probe for Locus	HAR35_2070
Locus	POPA2_0685
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare