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GrainGenes Marker Report: POPA2_0556

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Locus	POPA2_0556
Type	SNP
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 24.99 Hordeum-OPA123-2008-3H 24.99
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16252
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0556 Most representative HarvEST:Barley Assembly #32 Unigene = 3429 Most representative HarvEST:Barley Assembly #35 Unigene = 16252 HarvEST Unigene 35 Probe Set = Contig4865_at; Contig4865_s_at Unigene 35 Rice Locus = LOC_Os01g08450 Description for best rice BLAST hit to Unigene 35 member = GTP-binding protein YPTM2, putative, expressed; E value = 1E-105 Marker name in barley Pilot OPA2 = 2_0556 Original SNP name = 3429-720 Original SNP name = SCRI_abc16651_02_484 HarvEST Unigene 35 Probe Set = Contig4865_at, Contig4865_s_at Description for best rice BLAST hit to Unigene 35 member = protein GTP-binding protein YPTM2, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = GTP-binding protein YPTM2, putative, expressed
Probe for Locus	HAR35_16252
Locus	POPA2_0556
Synonym	Synonym CDO395
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare