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GrainGenes Marker Report: POPA2_0524

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Locus	POPA2_0524
Type	SNP
Synonym	Other name 11_20524 BOPA1_11_20524 BOPA1_3326-1954 Synonym 11_20524
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 42.41 Hordeum-OWB-OPA2008-5H 58.35
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16160 i_11_20524
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0524 Marker name in barley OPA1 = 11_20524 Original SNP name = 3326-1954 Most representative HarvEST:Barley Assembly #32 Unigene = 3326 Most representative HarvEST:Barley Assembly #35 Unigene = 16160 HarvEST Unigene 35 Probe Set = Contig4734_at; Contig4734_s_at Unigene 35 Rice Locus = LOC_Os12g07670 Description for best rice BLAST hit to Unigene 35 member = transmembrane 9 superfamily protein member 3 precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0524 Original SNP name = ABC12038_1_1_682 HarvEST Unigene 35 Probe Set = Contig4734_at, Contig4734_s_at Description for best rice BLAST hit to Unigene 35 member = protein transmembrane 9 superfamily protein member 3 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = transmembrane 9 superfamily protein member 3 precursor, putative, expressed
Probe for Locus	HAR35_16160
Locus	POPA2_0524