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GrainGenes Marker Report: POPA2_0428

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Locus	POPA2_0428
Type	SNP
Synonym	Other name 11_20428 BOPA1_11_20428 BOPA1_2861-1941 Synonym 11_20428
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 56.4 Hordeum-OPA123-2008-3H 56.4 Hordeum-OPAConsensus-2011-3H 67.86
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1379 i_11_20428
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0428 Marker name in barley OPA1 = 11_20428 Original SNP name = 2861-1941 Most representative HarvEST:Barley Assembly #32 Unigene = 2861 Most representative HarvEST:Barley Assembly #35 Unigene = 1379 HarvEST Unigene 35 Probe Set = Contig4211_at; Contig4212_s_at Unigene 35 Rice Locus = LOC_Os01g37690 Description for best rice BLAST hit to Unigene 35 member = vacuolar cation/proton exchanger 1a, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0428 HarvEST Unigene 35 Probe Set = Contig4211_at, Contig4212_s_at Description for best rice BLAST hit to Unigene 35 member = protein vacuolar cation/proton exchanger 1a, putative, expressed; E value = 0 BLAST hit in the rice genome = vacuolar cation/proton exchanger 1a, putative, expressed
Probe for Locus	HAR35_1379
Locus	POPA2_0428
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare