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GrainGenes Marker Report: POPA2_0407

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Locus	POPA2_0407
Type	SNP
Synonym	Other name 12_20407 BOPA2_12_20407 Synonym 12_20407
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15787 i_12_20407
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0407 Marker name in barley OPA1 = 12_20407 Original SNP name = 2747-903 Most representative HarvEST:Barley Assembly #32 Unigene = 2747 Most representative HarvEST:Barley Assembly #35 Unigene = 15787 HarvEST Unigene 35 Probe Set = Contig3956_at; Contig3958_s_at Unigene 35 Rice Locus = LOC_Os06g43590 Description for best rice BLAST hit to Unigene 35 member = charged multivesicular body protein 1b, putative, expressed; E value = 1E-104 BLAST hit in the rice genome = charged multivesicular body protein 1b, putative, expressed
Probe for Locus	HAR35_15787
Locus	POPA2_0407 POPA1_0364