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GrainGenes Marker Report: POPA2_0395

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Locus	POPA2_0395
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 68.32 Hordeum-OPA123-2008-3H 68.32
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1308
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0395 Most representative HarvEST:Barley Assembly #32 Unigene = 2648 Most representative HarvEST:Barley Assembly #35 Unigene = 1308 HarvEST Unigene 35 Probe Set = Contig3802_at Unigene 35 Rice Locus = LOC_Os01g52214 Description for best rice BLAST hit to Unigene 35 member = NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed; E value = 1E-108 Marker name in barley Pilot OPA2 = 2_0395 Original SNP name = 2648-820 Original SNP name = U32_5731_1803 Description for best rice BLAST hit to Unigene 35 member = protein NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed; E value = 1E-108 BLAST hit in the rice genome = NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_1308
Locus	POPA2_0395
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare