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GrainGenes Marker Report: POPA2_0392

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Locus	POPA2_0392
Type	SNP
Synonym	Other name 11_20392 BOPA1_11_20392 BOPA1_264-571 Synonym 11_20392
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 70.48 Hordeum-OPA123-2008-5H 70.48 Hordeum-OPAConsensus-2011-5H 60.21 Hordeum-OWB-OPA2008-5H 73.69
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1799 i_11_20392
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0392 Marker name in barley OPA1 = 11_20392 Original SNP name = 264-571 Most representative HarvEST:Barley Assembly #32 Unigene = 264 Most representative HarvEST:Barley Assembly #35 Unigene = 1799 HarvEST Unigene 35 Probe Set = Contig401_at; EBed02_SQ003_F07_s_at Unigene 35 Rice Locus = LOC_Os09g26730 Description for best rice BLAST hit to Unigene 35 member = chaperonin, chloroplast precursor, putative, expressed; E value = 7E-96 Marker name in barley Pilot OPA2 = 2_0392 HarvEST Unigene 35 Probe Set = Contig401_at, EBed02_SQ003_F07_s_at Description for best rice BLAST hit to Unigene 35 member = protein chaperonin, chloroplast precursor, putative, expressed; E value = 7E-96 BLAST hit in the rice genome = chaperonin, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_1799
Locus	POPA2_0392 POPA1_0341
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare