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GrainGenes Marker Report: POPA2_0327

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Locus	POPA2_0327
Type	SNP
Synonym	Other name 11_20327 BOPA1_11_20327 BOPA1_2249-1308 Synonym 11_20327
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 103.92 Hordeum-OPA123-2008-5H 103.92 Hordeum-OPAConsensus-2011-5H 93.22
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1109 i_11_20327
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0327 Marker name in barley OPA1 = 11_20327 Original SNP name = 2249-1308 Most representative HarvEST:Barley Assembly #32 Unigene = 2249 Most representative HarvEST:Barley Assembly #35 Unigene = 1109 HarvEST Unigene 35 Probe Set = Contig1977_s_at; Contig3299_s_at Unigene 35 Rice Locus = LOC_Os09g33500 Description for best rice BLAST hit to Unigene 35 member = pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0327 HarvEST Unigene 35 Probe Set = Contig1977_s_at, Contig3299_s_at Description for best rice BLAST hit to Unigene 35 member = protein pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_1109
Locus	POPA2_0327 POPA1_0255
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare