GrainGenes Marker Report: POPA2_0213
Locus
POPA2_0213
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 161.41 Hordeum-OPA-2009-5H 171.66 Hordeum-OPA123-2008-5H 171.66 Hordeum-OPAConsensus-2011-5H 163.72
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14548
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0213 Most representative HarvEST:Barley Assembly #32 Unigene = 160 Most representative HarvEST:Barley Assembly #35 Unigene = 14548 HarvEST Unigene 35 Probe Set = Contig632_s_at; Contig699_at Unigene 35 Rice Locus = LOC_Os03g57340 Description for best rice BLAST hit to Unigene 35 member = dnaJ protein, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0213 Original SNP name = 160-325 HarvEST Unigene 35 Probe Set = Contig632_s_at, Contig699_at Description for best rice BLAST hit to Unigene 35 member = protein dnaJ protein, putative, expressed; E value = 0 BLAST hit in the rice genome = dnaJ protein, putative, expressed
Probe for Locus
HAR35_14548
Locus
POPA2_0213
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0213
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