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GrainGenes Marker Report: POPA2_0179

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Locus	POPA2_0179
Type	SNP
Synonym	Synonym 11_20179
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 42.41 Hordeum-OWB-OPA2008-5H 58.35
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_14894
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0179 Marker name in barley OPA1 = 11_20179 Original SNP name = 1468-782 Most representative HarvEST:Barley Assembly #32 Unigene = 1468 Most representative HarvEST:Barley Assembly #35 Unigene = 14894 HarvEST Unigene 35 Probe Set = Contig2159_at Unigene 35 Rice Locus = LOC_Os11g06890 Description for best rice BLAST hit to Unigene 35 member = vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed; E value = 4E-86 Marker name in barley Pilot OPA2 = 2_0179 Description for best rice BLAST hit to Unigene 35 member = protein vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed; E value = 4E-86 BLAST hit in the rice genome = vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
Probe for Locus	HAR35_14894
Locus	POPA2_0179 POPA1_0106
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare