Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0146

[Submit comment/correction]

Locus	POPA2_0146
Type	SNP
Synonym	Other name 11_20146 BOPA1_11_20146 BOPA1_13379-171 Synonym 11_20146
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_7113 i_11_20146
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0146 Marker name in barley OPA1 = 11_20146 Original SNP name = 13379-171 Most representative HarvEST:Barley Assembly #32 Unigene = 13379 Most representative HarvEST:Barley Assembly #35 Unigene = 7113 HarvEST Unigene 35 Probe Set = Contig16614_at Unigene 35 Rice Locus = LOC_Os01g70210 Description for best rice BLAST hit to Unigene 35 member = phosphatidylinositol transfer protein CSR1, putative, expressed; E value = 7E-68 BLAST hit in the rice genome = phosphatidylinositol transfer protein CSR1, putative, expressed
Probe for Locus	HAR35_7113
Locus	POPA2_0146