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GrainGenes Marker Report: POPA2_0144

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Locus
POPA2_0144
Type
SNP
Synonym
Other name12_20144
BOPA2_12_20144
Synonym12_20144
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_21462
i_12_20144
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 2_0144
Marker name in barley OPA1 = 12_20144
Original SNP name = 13243-430
Most representative HarvEST:Barley Assembly #32 Unigene = 13243
Most representative HarvEST:Barley Assembly #35 Unigene = 21462
HarvEST Unigene 35 Probe Set = Contig15532_at
Unigene 35 Rice Locus = LOC_Os05g49900
Description for best rice BLAST hit to Unigene 35 member = fatty acid elongase, putative, expressed; E value = 9E-80
BLAST hit in the rice genome = fatty acid elongase, putative, expressed



Probe for Locus
HAR35_21462
Locus
POPA2_0144