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GrainGenes Marker Report: POPA2_0125

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Locus	POPA2_0125
Type	SNP
Synonym	Other name 11_20125 BOPA1_11_20125 BOPA1_1270-1263 Synonym 11_20125
Chromosome	1H
Map	Hordeum-OPAConsensus-2011-1H 105.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_14601 i_11_20125
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0125 Marker name in barley OPA1 = 11_20125 Original SNP name = 1270-1263 Most representative HarvEST:Barley Assembly #32 Unigene = 1270 Most representative HarvEST:Barley Assembly #35 Unigene = 14601 HarvEST Unigene 35 Probe Set = Contig1881_at; Contig1881_s_at Unigene 35 Rice Locus = LOC_Os05g43690 Description for best rice BLAST hit to Unigene 35 member = GPI-anchored protein, putative, expressed; E value = 1E-68 BLAST hit in the rice genome = GPI-anchored protein, putative, expressed
Probe for Locus	HAR35_14601
Locus	POPA2_0125