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GrainGenes Marker Report: POPA2_0057

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Locus
POPA2_0057
Type
SNP
Synonym
Other name11_20057
BOPA1_10982-896
BOPA1_11_20057
Synonym11_20057
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H168.4
Hordeum-OPA123-2008-3H168.4
Hordeum-OPAConsensus-2011-3H174.45
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_20986
i_11_20057
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0057
Marker name in barley OPA1 = 11_20057
Original SNP name = 10982-896
Most representative HarvEST:Barley Assembly #32 Unigene = 10982
Most representative HarvEST:Barley Assembly #35 Unigene = 20986
HarvEST Unigene 35 Probe Set = Contig13874_at; HM09F12r_s_at
Unigene 35 Rice Locus = LOC_Os08g38810
Description for best rice BLAST hit to Unigene 35 member = RAFTIN1a protein, putative, expressed; E value = 4E-39
Marker name in barley Pilot OPA2 = 2_0057
HarvEST Unigene 35 Probe Set = Contig13874_at, HM09F12r_s_at
Description for best rice BLAST hit to Unigene 35 member = protein RAFTIN1a protein, putative, expressed; E value = 4E-39
BLAST hit in the rice genome = RAFTIN1a protein, putative, expressed


Probe for Locus
HAR35_20986
Locus
POPA2_0057
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare