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GrainGenes Marker Report: POPA2_0003

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Locus
POPA2_0003
Type
SNP
Synonym
Other name11_20003
BOPA1_10047-338
BOPA1_11_20003
Synonym11_20003
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H118.9
Hordeum-OPA-2009-5H129.41
Hordeum-OPA123-2008-5H129.41
Hordeum-OPAConsensus-2011-5H121.67
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19761
i_11_20003
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0003
Marker name in barley OPA1 = 11_20003
Original SNP name = 10047-338
Most representative HarvEST:Barley Assembly #32 Unigene = 10047
Most representative HarvEST:Barley Assembly #35 Unigene = 19761
HarvEST Unigene 35 Probe Set = Contig12998_at
Unigene 35 Rice Locus = LOC_Os03g44520
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-47
Marker name in barley Pilot OPA2 = 2_0003
Original SNP name = U32_5714_470
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-47
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_19761
Locus
POPA2_0003
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare