Query (optional)   in Class  

GrainGenes Marker Report: POPA1_1528

[Submit comment/correction]

Locus
POPA1_1528
Type
SNP
Synonym
Other name11_11528
BOPA1_11_11528
BOPA1_ConsensusGBS0687-3
Synonym11_11528
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H116.5
Hordeum-OPA-2009-1H121.12
Hordeum-OPA123-2008-1H121.12
Hordeum-OPAConsensus-2011-1H122.34
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_8487
i_11_11528
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1528
Marker name in barley OPA1 = 11_11528
Original SNP name = ConsensusGBS0687-3
Most representative HarvEST:Barley Assembly #32 Unigene = 16561
Most representative HarvEST:Barley Assembly #35 Unigene = 8487
HarvEST Unigene 35 Probe Set = Contig24472_at
Unigene 35 Rice Locus = LOC_Os07g35060
Description for best rice BLAST hit to Unigene 35 member = F-box domain containing protein, expressed; E value = 1E-39
Description for best rice BLAST hit to Unigene 35 member = protein F-box domain containing protein, expressed; E value = 1E-39
BLAST hit in the rice genome = F-box domain containing protein, expressed


Probe for Locus
HAR35_8487
Locus
POPA1_1528
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare