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GrainGenes Marker Report: POPA1_1519

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Locus	POPA1_1519
Type	SNP
Chromosome	7H
Chromosome Arm	7HS
Map	Barley-Core-2014_7H 76.85 Hordeum-OPA-2009-7H 77.45 Hordeum-OPA123-2008-7H 77.45 Hordeum-OPAConsensus-2011-7H 79.08 Hordeum-OWB-OPA2008-7H 79.577
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_20049
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1519 Most representative HarvEST:Barley Assembly #32 Unigene = 11761 Most representative HarvEST:Barley Assembly #35 Unigene = 20049 HarvEST Unigene 35 Probe Set = Contig14363_at Unigene 35 Rice Locus = LOC_Os08g41670 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-123 Original SNP name = ConsensusGBS0643-1 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-123 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_20049
Locus	POPA1_1519
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare