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GrainGenes Marker Report: POPA1_1442

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Locus	POPA1_1442
Type	SNP
Synonym	Other name 12_11442 BOPA2_12_11442 Synonym 12_11442
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 55.65 Hordeum-OPA123-2008-6H 55.65 Hordeum-OPAConsensus-2011-6H 59.25 Hordeum-OWB-OPA2008-6H 67.419
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17975 i_12_11442
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1442 Marker name in barley OPA1 = 12_11442 Original SNP name = ConsensusGBS0088-1 Most representative HarvEST:Barley Assembly #32 Unigene = 6909 Most representative HarvEST:Barley Assembly #35 Unigene = 17975 HarvEST Unigene 35 Probe Set = Contig9660_at Unigene 35 Rice Locus = LOC_Os02g38240 Description for best rice BLAST hit to Unigene 35 member = rhodanese family protein, putative, expressed; E value = 1E-135 Marker name in barley OPA2 = 12_11442 Description for best rice BLAST hit to Unigene 35 member = protein rhodanese family protein, putative, expressed; E value = 1E-135 BLAST hit in the rice genome = rhodanese family protein, putative, expressed
Probe for Locus	HAR35_17975
Locus	POPA1_1442
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare