GrainGenes Marker Report: POPA1_1397
Locus
POPA1_1397
Type
SNP
Chromosome
4H
Chromosome Arm
4HS
Map
Barley-Core-2014_4H 16.3 Hordeum-OPA-2009-4H 16.5 Hordeum-OPA123-2008-4H 16.5 Hordeum-OPAConsensus-2011-4H 15.62
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_22733
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1397 Most representative HarvEST:Barley Assembly #32 Unigene = 16585 Most representative HarvEST:Barley Assembly #35 Unigene = 22733 HarvEST Unigene 35 Probe Set = Contig19814_at Unigene 35 Rice Locus = LOC_Os03g47780 Description for best rice BLAST hit to Unigene 35 member = WD-repeat protein pop3, putative, expressed; E value = 3E-50 Original SNP name = ABC19814-pHv3198-01 Description for best rice BLAST hit to Unigene 35 member = protein WD-repeat protein pop3, putative, expressed; E value = 3E-50 BLAST hit in the rice genome = WD-repeat protein pop3, putative, expressed
Probe for Locus
HAR35_22733
Locus
POPA1_1397
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1397
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