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GrainGenes Marker Report: POPA1_1377

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Locus	POPA1_1377
Type	SNP
Synonym	Other name 12_11377 BOPA2_12_11377 Synonym 12_11377
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 84.07 Hordeum-OPA123-2008-7H 84.07 Hordeum-OPAConsensus-2011-7H 84.3
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_23186 i_12_11377
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1377 Marker name in barley OPA1 = 12_11377 Original SNP name = ABC17088-1-1-247 Most representative HarvEST:Barley Assembly #32 Unigene = 15128 Most representative HarvEST:Barley Assembly #35 Unigene = 23186 HarvEST Unigene 35 Probe Set = Contig17088_at Unigene 35 Rice Locus = LOC_Os09g24670 Description for best rice BLAST hit to Unigene 35 member = CAAX amino terminal protease family protein, putative, expressed; E value = 0.0000000000005 Marker name in barley OPA2 = 12_11377 Original SNP name = U32_6423_891 Description for best rice BLAST hit to Unigene 35 member = protein CAAX amino terminal protease family protein, putative, expressed; E value = 0.0000000000005 BLAST hit in the rice genome = CAAX amino terminal protease family protein, putative, expressed
Probe for Locus	HAR35_23186
Locus	POPA1_1377
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare