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GrainGenes Marker Report: POPA1_1330

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Locus	POPA1_1330
Type	SNP
Synonym	Other name 11_11330 BOPA1_11_11330 BOPA1_ABC13753-1-2-167 Synonym 11_11330
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 105.3 Hordeum-OPA-2009-3H 120.59 Hordeum-OPA123-2008-3H 120.59 Hordeum-OPAConsensus-2011-3H 129.83 Hordeum-OWB-OPA2008-3H 140.508
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_6405 i_11_11330
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1330 Marker name in barley OPA1 = 11_11330 Original SNP name = ABC13753-1-2-167 Most representative HarvEST:Barley Assembly #32 Unigene = 10909 Most representative HarvEST:Barley Assembly #35 Unigene = 6405 HarvEST Unigene 35 Probe Set = Contig13753_at; Dhn10(Morex)_s_at Unigene 35 Rice Locus = LOC_Os11g26790 Description for best rice BLAST hit to Unigene 35 member = water stress-inducible protein Rab21, putative, expressed; E value = 1E-34 Original SNP name = ABC14021_1_457 HarvEST Unigene 35 Probe Set = Contig13753_at, Dhn10(Morex)_s_at Description for best rice BLAST hit to Unigene 35 member = protein water stress-inducible protein Rab21, putative, expressed; E value = 1E-34 BLAST hit in the rice genome = water stress-inducible protein Rab21, putative, expressed
Probe for Locus	HAR35_6405
Locus	POPA1_1330
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare