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GrainGenes Marker Report: POPA1_1276

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Locus	POPA1_1276
Type	SNP
Synonym	Other name 11_11276 BOPA1_11_11276 BOPA1_ABC11278-1-1-76 Synonym 11_11276
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_19154 i_11_11276
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1276 Marker name in barley OPA1 = 11_11276 Original SNP name = ABC11278-1-1-76 Most representative HarvEST:Barley Assembly #32 Unigene = 9069 Most representative HarvEST:Barley Assembly #35 Unigene = 19154 HarvEST Unigene 35 Probe Set = Contig11278_at Unigene 35 Rice Locus = LOC_Os03g49620 Description for best rice BLAST hit to Unigene 35 member = BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Probe for Locus	HAR35_19154
Locus	POPA1_1276