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GrainGenes Marker Report: POPA1_1096

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Locus	POPA1_1096
Type	SNP
Synonym	Other name 12_11096 BOPA2_12_11096 Synonym 12_11096
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 69.16 Hordeum-OPA123-2008-2H 69.16 Hordeum-OPAConsensus-2011-2H 79.92 Hordeum-OWB-OPA2008-2H 82.583
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1644 i_12_11096
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1096 Marker name in barley OPA1 = 12_11096 Original SNP name = ABC04704-3-1-245 Most representative HarvEST:Barley Assembly #32 Unigene = 3260 Most representative HarvEST:Barley Assembly #35 Unigene = 1644 HarvEST Unigene 35 Probe Set = Contig4704_at Unigene 35 Rice Locus = LOC_Os02g37420 Description for best rice BLAST hit to Unigene 35 member = ras-related protein Rab-2-A, putative, expressed; E value = 1E-113 Marker name in barley OPA2 = 12_11096 Description for best rice BLAST hit to Unigene 35 member = protein ras-related protein Rab-2-A, putative, expressed; E value = 1E-113 BLAST hit in the rice genome = ras-related protein Rab-2-A, putative, expressed
Probe for Locus	HAR35_1644
Locus	POPA1_1096
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare