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GrainGenes Marker Report: POPA1_1095

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Locus	POPA1_1095
Type	SNP
Synonym	Other name 12_11095 BOPA2_12_11095 Synonym 12_11095
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_467 i_12_11095
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1095 Marker name in barley OPA1 = 12_11095 Original SNP name = ABC04634-pHv100-03 Most representative HarvEST:Barley Assembly #32 Unigene = 3287 Most representative HarvEST:Barley Assembly #35 Unigene = 467 HarvEST Unigene 35 Probe Set = Contig4632_s_at Unigene 35 Rice Locus = LOC_Os01g71080 Description for best rice BLAST hit to Unigene 35 member = xylanase inhibitor TAXI-IV, putative, expressed; E value = 5E-78 BLAST hit in the rice genome = xylanase inhibitor TAXI-IV, putative, expressed
Probe for Locus	HAR35_467
Locus	POPA1_1095