Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1023

[Submit comment/correction]

Locus	POPA1_1023
Type	SNP
Synonym	Other name 11_11023 BOPA1_11_11023 BOPA1_968-979 Synonym 11_11023
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 135.6 Hordeum-OPA-2009-2H 141.28 Hordeum-OPA123-2008-2H 141.28 Hordeum-OPAConsensus-2011-2H 158.6 Hordeum-OWB-OPA2008-2H 172.555
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14398 i_11_11023
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1023 Marker name in barley OPA1 = 11_11023 Original SNP name = 968-979 Most representative HarvEST:Barley Assembly #32 Unigene = 968 Most representative HarvEST:Barley Assembly #35 Unigene = 14398 HarvEST Unigene 35 Probe Set = Contig1433_at; Contig1437_s_at; HU02F20u_at Unigene 35 Rice Locus = LOC_Os04g57220 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed; E value = 7E-84 HarvEST Unigene 35 Probe Set = Contig1433_at, Contig1437_s_at, HU02F20u_at Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed; E value = 7E-84 BLAST hit in the rice genome = ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Probe for Locus	HAR35_14398
Locus	POPA1_1023
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare