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GrainGenes Marker Report: POPA1_1010

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Locus
POPA1_1010
Type
SNP
Synonym
Other name12_11010
BOPA2_12_11010
Synonym12_11010
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H178.43
Hordeum-OPA123-2008-5H178.43
Hordeum-OPAConsensus-2011-5H169.14
Hordeum-OWB-OPA2008-5H223.644
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_14174
i_12_11010
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1010
Marker name in barley OPA1 = 12_11010
Original SNP name = 930-595
Most representative HarvEST:Barley Assembly #32 Unigene = 930
Most representative HarvEST:Barley Assembly #35 Unigene = 14174
HarvEST Unigene 35 Probe Set = Contig1389_s_at
Unigene 35 Rice Locus = LOC_Os03g61970
Description for best rice BLAST hit to Unigene 35 member = actin-3, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_11010
Description for best rice BLAST hit to Unigene 35 member = protein actin-3, putative, expressed; E value = 0
BLAST hit in the rice genome = actin-3, putative, expressed


Probe for Locus
HAR35_14174
Locus
POPA1_1010
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare