Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0985

[Submit comment/correction]

Locus	POPA1_0985
Type	SNP
Synonym	Other name 11_10985 BOPA1_11_10985 BOPA1_8613-278 Synonym 11_10985
Chromosome	1H
Map	Barley, 2012 9KSNP 1H 47.8 Hordeum-OPAConsensus-2011-1H 42.42
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_19060 i_11_10985
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0985 Marker name in barley OPA1 = 11_10985 Original SNP name = 8613-278 Most representative HarvEST:Barley Assembly #32 Unigene = 8613 Most representative HarvEST:Barley Assembly #35 Unigene = 19060 HarvEST Unigene 35 Probe Set = Contig10962_at Unigene 35 Rice Locus = LOC_Os05g12580 Description for best rice BLAST hit to Unigene 35 member = AGP20, putative; E value = 0.000000000000000002 BLAST hit in the rice genome = AGP20, putative
Probe for Locus	HAR35_19060
Locus	POPA1_0985