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GrainGenes Marker Report: POPA1_0826

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Locus
POPA1_0826
Type
SNP
Synonym
Other name11_10826
BOPA1_11_10826
BOPA1_6157-1233
Synonym11_10826
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H139.65
Hordeum-OPA123-2008-2H139.65
Hordeum-OPAConsensus-2011-2H155.68
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17949
i_11_10826
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0826
Marker name in barley OPA1 = 11_10826
Original SNP name = 6157-1233
Most representative HarvEST:Barley Assembly #32 Unigene = 6157
Most representative HarvEST:Barley Assembly #35 Unigene = 17949
HarvEST Unigene 35 Probe Set = Contig8355_at; Contig8356_s_at
Unigene 35 Rice Locus = LOC_Os04g54390
Description for best rice BLAST hit to Unigene 35 member = nuclease PA3, putative, expressed; E value = 5E-99
HarvEST Unigene 35 Probe Set = Contig8355_at, Contig8356_s_at
Description for best rice BLAST hit to Unigene 35 member = protein nuclease PA3, putative, expressed; E value = 5E-99
BLAST hit in the rice genome = nuclease PA3, putative, expressed


Probe for Locus
HAR35_17949
Locus
POPA1_0826
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare