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GrainGenes Marker Report: POPA1_0807

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Locus	POPA1_0807
Type	SNP
Synonym	Other name 11_10807 BOPA1_11_10807 BOPA1_587-1438 Synonym 11_10807
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 55.63 Hordeum-OPA123-2008-4H 55.63 Hordeum-OPAConsensus-2011-4H 63.79
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_372 i_11_10807
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0807 Marker name in barley OPA1 = 11_10807 Original SNP name = 587-1438 Most representative HarvEST:Barley Assembly #32 Unigene = 587 Most representative HarvEST:Barley Assembly #35 Unigene = 372 HarvEST Unigene 35 Probe Set = Contig998_s_at; HVSMEl0011L15f2_s_at Unigene 35 Rice Locus = LOC_Os03g16860 Description for best rice BLAST hit to Unigene 35 member = heat shock cognate 70 kDa protein 2, putative, expressed; E value = 0 Original SNP name = U35_20464_428 HarvEST Unigene 35 Probe Set = Contig998_s_at, HVSMEl0011L15f2_s_at Description for best rice BLAST hit to Unigene 35 member = protein heat shock cognate 70 kDa protein 2, putative, expressed; E value = 0 BLAST hit in the rice genome = heat shock cognate 70 kDa protein 2, putative, expressed
Probe for Locus	HAR35_372
Locus	POPA1_0807 POPA2_1013
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare