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GrainGenes Marker Report: POPA1_0766

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Locus	POPA1_0766
Type	SNP
Synonym	Synonym 12_10766
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 141.28 Hordeum-OPA123-2008-2H 141.28 Hordeum-OPAConsensus-2011-2H 158.18
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_17405
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0766 Marker name in barley OPA1 = 12_10766 Original SNP name = 5383-999 Most representative HarvEST:Barley Assembly #32 Unigene = 5383 Most representative HarvEST:Barley Assembly #35 Unigene = 17405 HarvEST Unigene 35 Probe Set = Contig7341_s_at; Contig7342_at Unigene 35 Rice Locus = LOC_Os08g03870 Description for best rice BLAST hit to Unigene 35 member = cupin, RmlC-type, putative, expressed; E value = 1E-115 Marker name in barley OPA2 = 12_10766 HarvEST Unigene 35 Probe Set = Contig7341_s_at, Contig7342_at Description for best rice BLAST hit to Unigene 35 member = protein cupin, RmlC-type, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = cupin, RmlC-type, putative, expressed
Probe for Locus	HAR35_17405
Locus	POPA1_0766
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare