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GrainGenes Marker Report: POPA1_0745

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Locus	POPA1_0745
Type	SNP
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 2.09 Hordeum-OPA123-2008-5H 2.09
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_2783
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0745 Most representative HarvEST:Barley Assembly #32 Unigene = 5206 Most representative HarvEST:Barley Assembly #35 Unigene = 2783 HarvEST Unigene 35 Probe Set = Contig7295_s_at Unigene 35 Rice Locus = LOC_Os03g49150 Description for best rice BLAST hit to Unigene 35 member = protein yippee-like, putative, expressed; E value = 4E-39 Original SNP name = 5206-758 Original SNP name = SCRI_hina_1231 Description for best rice BLAST hit to Unigene 35 member = protein protein yippee-like, putative, expressed; E value = 4E-39 BLAST hit in the rice genome = protein yippee-like, putative, expressed
Probe for Locus	HAR35_2783
Locus	POPA2_0894 POPA1_0745
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare