GrainGenes Marker Report: POPA1_0660
Locus
POPA1_0660
Type
SNP
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H 31.02 Hordeum-OPA123-2008-2H 31.02
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2416
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0660 Most representative HarvEST:Barley Assembly #32 Unigene = 4490 Most representative HarvEST:Barley Assembly #35 Unigene = 2416 HarvEST Unigene 35 Probe Set = Contig6254_at Unigene 35 Rice Locus = LOC_Os01g08650 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 7E-38 Original SNP name = 4490-1344 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 7E-38 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_2416
Locus
POPA1_0660
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0660
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