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GrainGenes Marker Report: POPA1_0643

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Locus	POPA1_0643
Type	SNP
Synonym	Other name 12_10643 BOPA2_12_10643 Synonym 12_10643
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16707 i_12_10643
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0643 Marker name in barley OPA1 = 12_10643 Original SNP name = 4370-419 Most representative HarvEST:Barley Assembly #32 Unigene = 4370 Most representative HarvEST:Barley Assembly #35 Unigene = 16707 HarvEST Unigene 35 Probe Set = Contig6148_at Unigene 35 Rice Locus = LOC_Os06g46930 Description for best rice BLAST hit to Unigene 35 member = 50S ribosomal protein L24, chloroplast precursor, putative, expressed; E value = 2E-89 BLAST hit in the rice genome = 50S ribosomal protein L24, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_16707
Locus	POPA1_0643