GrainGenes Marker Report: POPA1_0628
Locus
POPA1_0628
Type
SNP
Synonym
Other name 11_10628 BOPA1_11_10628 BOPA1_42-512 Synonym 11_10628
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H 87.24 Hordeum-OPA123-2008-3H 87.24 Hordeum-OPAConsensus-2011-3H 98.05
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15 i_11_10628
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0628 Marker name in barley OPA1 = 11_10628 Original SNP name = 42-512 Most representative HarvEST:Barley Assembly #32 Unigene = 42 Most representative HarvEST:Barley Assembly #35 Unigene = 15 HarvEST Unigene 35 Probe Set = Contig4298_at; HV10C01u_s_at Unigene 35 Rice Locus = LOC_Os01g58890 Description for best rice BLAST hit to Unigene 35 member = cystatin-1 precursor, putative, expressed; E value = 7E-39 HarvEST Unigene 35 Probe Set = Contig4298_at, HV10C01u_s_at Description for best rice BLAST hit to Unigene 35 member = protein cystatin-1 precursor, putative, expressed; E value = 7E-39 BLAST hit in the rice genome = cystatin-1 precursor, putative, expressed
Probe for Locus
HAR35_15
Locus
POPA1_0628
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0628
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