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GrainGenes Marker Report: POPA1_0623

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Locus	POPA1_0623
Type	SNP
Synonym	Other name 12_10623 BOPA2_12_10623 Synonym 12_10623
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_871 i_12_10623
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0623 Marker name in barley OPA1 = 12_10623 Original SNP name = 4220-430 Most representative HarvEST:Barley Assembly #32 Unigene = 4220 Most representative HarvEST:Barley Assembly #35 Unigene = 871 HarvEST Unigene 35 Probe Set = Contig5814_at Unigene 35 Rice Locus = LOC_Os08g08040 Description for best rice BLAST hit to Unigene 35 member = LSM7 homolog, U6 small nuclear RNA associated, putative, expressed; E value = 4E-44 BLAST hit in the rice genome = LSM7 homolog, U6 small nuclear RNA associated, putative, expressed
Probe for Locus	HAR35_871
Locus	POPA1_0623